species:   Rhsol
pid:       PID0532
parent:    Rhi-milR-88
paralog:   
locus:     KB317905.1:239-347
matures:   ['GUAGUAGUACGGCUGUAAGCGC', 'GCAACAGUAGUAUAGCCUAGAU']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317905.1:239-347

1 out of bounds
12 alignments
11 proper strand
8 stranded perfect matches

                       **********************                         **********************                 
UAGAUAAGCAGUAGGUUGUCUUAUGCAACAGUAGUAUAGCCUAGAUAGAGUAGAUUACAUAAGUCUCAAGUGUAGUAGUACGGCUGUAAGCGCCCGCUCCCACCAGCGU
.((((((.(....).))))))...((.(((((.((((.((.((.((...(.(((((.....))))))..)).)))).)))).)))))..))...((((......)))).
-----------------------------------------------------------------------GUAGUAGUACGGCUGUAAGCGC---------------- l=22 a=0 c
------------------------GCAACAGUAGUAUAGCCUAGAU--------------------------------------------------------------- l=22 a=0 c*
------------------------------------------------------------------------UAGUAGUACGGCUGUAAGCG----------------- l=20 a=4 ma
-------------------------CAACAGUAGUAUAGCCUAGA---------------------------------------------------------------- l=20 a=0 ma*

--------------------------------------------------------------------uGUGUAGUAGUACGGCUGUAA-------------------- l=21 a=1 
--------------------------------------------------------------------uGUGUAGUAGUACGGCUGUAAG------------------- l=22 a=2 
----------------------------------------------------------------------UGUAGUAGUACGGCUGUAAGCG----------------- l=22 a=1 
------------------------------------------------------------------------UAGUAGUACGGCUGUAAGCG----------------- l=20 a=4 (ma)
------------------------------------------------------------------------UAGUAGUACGGCUGUAAGCGC---------------- l=21 a=3 

mb-01011
ax-1011011
ku-01
ss-111111101110
fn-111
